PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107554.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 477aa    MW: 52350.1 Da    PI: 10.0007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107554.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010107554.1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                    89*******************88 PP

2zf-C2H212.20.0005583105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_010107554.1  83 WKCDKCSKKYAVQSDWKAHSKTC 105
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121717.5E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551004878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-778103No hitNo description
SMARTSM0035515083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSNK DLVKKKVYIC PEKTCVHHDP  60
SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FTTSVATNLS FGNEMMNTNT NNIVNHPHQQ PDLHTGYPGR  180
GPAQNVAGMA QYGPDNFHQQ QDFTNAKPRL SLWLNQQAAN SHHHQLNPMN SFFVSHHDRI  240
MQMGMSSSSS SSSTIFGNST SGNNKNNNAS HFLGFNDQKI NHANSTSSST LIPNLSLMSP  300
LHQLGSSSSL KEEPKQPVVP MSATALLQKA AQMGSTRSSN NNNNNISSNS FFGNSSSGLM  360
ISSSMSNTIS STTTTMSFNS LNQNGLVLEG SNSSASNGLS QLVMQKSCSS STSGKVSGDN  420
QTVQVLKLHH SSSNGVENGL TRDFLGSGSG DHNSQRQFLP VHDLGKFGTI GSDLQWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107554.10.0Zinc finger protein JACKDAW
TrEMBLW9RX870.0W9RX87_9R
STRINGPOPTR_0006s13130.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.13e-88C2H2-like zinc finger protein